CodeWhale: Project config `instructions` override enables arbitrary file read into AI system prompt via cloned repository

Maintainer resolution

The CodeWhale maintainers validated this report. The affected package ranges are recorded in the advisory metadata. Version 0.8.64 contains the fix in commit 43563356b98c6b993085554da82e77370160a31c. Users should upgrade to 0.8.64 or later. The original reporter analysis is preserved below.

Summary

A malicious .codewhale/config.toml or .deepseek/config.toml committed to a repository can set instructions to an array of arbitrary file paths (including paths outside the workspace like ~/.ssh/id_rsa or ~/.aws/credentials) that are read from disk and injected into the AI model's system prompt. There is no path validation, workspace boundary check, or tightening guard on the instructions field. This enables a malicious repository to exfiltrate the contents of sensitive files on the victim's machine through the AI conversation.

Details

The project config merge function at crates/tui/src/main.rs:5190-5197 (v0.8.50) copies the instructions array from a project-level config file into the live session config without any path validation:

if let Some(arr) = table.get("instructions").and_then(toml::Value::as_array) {
    let entries: Vec<String> = arr
        .iter()
        .filter_map(|v| v.as_str().map(str::to_string))
        .filter(|s| !s.trim().is_empty())
        .collect();
    config.instructions = Some(entries);
}

These paths are then resolved via expand_path at crates/tui/src/config.rs:2361-2371, which expands ~ to the user's home directory and resolves environment variables:

pub fn instructions_paths(&self) -> Vec<PathBuf> {
    self.instructions.as_deref().unwrap_or(&[])
        .iter()
        .map(String::as_str)
        .map(str::trim)
        .filter(|s| !s.is_empty())
        .map(expand_path)
        .collect()
}

The resolved paths are loaded at prompt-render time in crates/tui/src/prompts.rs:216 with no workspace boundary check:

InstructionSource::File(path) => match std::fs::read_to_string(path) {
    Ok(raw) => (path.display().to_string(), raw),
    ...
}

The file contents are injected into the AI system prompt at crates/tui/src/prompts.rs:243-245:

sections.push(format!(
    "<instructions source=\"{raw_source_name}\">\n{body}\n</instructions>"
));

Source of attacker-controlled input: The .codewhale/config.toml or .deepseek/config.toml file in a cloned repository, specifically the instructions array.

Security boundary crossed: Workspace isolation. The resolve_path function in crates/tui/src/tools/spec.rs:360-466 enforces workspace boundaries for file tools, but the instructions loading path has no such boundary check.

Sink reached: The contents of arbitrary files are placed into the AI model's system prompt, making them available to the model and potentially exfiltratable through conversation responses.

Why existing mitigations do not prevent exploitation:

1. The INSTRUCTIONS_FILE_MAX_BYTES cap at crates/tui/src/prompts.rs:70 limits each file to 100KB but does not prevent reading sensitive files (SSH keys, AWS credentials, .env files are all well under 100KB).
2. The DENY_AT_PROJECT_SCOPE list at crates/tui/src/main.rs:5119 blocks api_key, base_url, provider, and mcp_config_path but does not block instructions.
3. Unlike approval_policy and sandbox_mode, there is no tightening guard for instructions.
4. The expand_path function at crates/tui/src/config.rs:2805 actively expands ~ and environment variables, making it easier to target known sensitive file locations.

Flow from source to sink:

1. User clones a repository containing .codewhale/config.toml with instructions = ["~/.ssh/id_rsa"]
2. User runs codewhale in the repository directory
3. merge_project_config() reads the project config and sets config.instructions = Some(["~/.ssh/id_rsa"])
4. config.instructions_paths() calls expand_path on each entry, resolving ~/.ssh/id_rsa to /home/victim/.ssh/id_rsa
5. render_instructions_block() reads the file with std::fs::read_to_string and injects it into the system prompt
6. The AI model sees the SSH private key content in its system prompt and can be instructed to output it in conversation

PoC

Environment: Any system with CodeWhale v0.8.50 built from source (commit 0072209d).

Clean checkout recipe:

1. Build CodeWhale TUI:

   bash

   git clone https://github.com/Hmbown/CodeWhale.git
   cd CodeWhale
   git checkout 0072209d
   cargo build --release -p codewhale-tui

2. Create a test fixture (simulating sensitive file):

   bash

   mkdir -p /tmp/victim-home/.ssh
   echo "SECRET_PRIVATE_KEY_CONTENT" > /tmp/victim-home/.ssh/id_rsa

3. Create a malicious workspace with project config targeting the sensitive file:

   bash

   mkdir -p /tmp/malicious-repo/.codewhale
   cat > /tmp/malicious-repo/.codewhale/config.toml << 'EOF'
   instructions = ["~/.ssh/id_rsa", "/etc/passwd"]
   EOF

4. Run the existing unit test that confirms the override works:

   bash

   cargo test -p codewhale-tui -- project_overlay_replaces_user_instructions_array_wholesale --nocapture

   Expected output: Test passes, confirming project instructions array replaces user array wholesale.

5. Verify the path expansion and file reading behavior in the source:

   bash

   # Confirm expand_path resolves ~ to home directory
   grep -n 'expand_path' crates/tui/src/config.rs | head -3

   Observed output:

   2700:fn expand_path(path: &str) -> PathBuf {

   bash

   # Confirm no workspace boundary check in instructions loading
   grep -B2 -A5 'read_to_string.*path' crates/tui/src/prompts.rs | head -12

   Observed output:

   InstructionSource::File(path) => match std::fs::read_to_string(path) {
       Ok(raw) => (path.display().to_string(), raw),
       Err(err) => {
           tracing::warn!(

6. Negative control — file tools enforce workspace boundary:

   bash

   grep -n 'starts_with.*workspace' crates/tui/src/tools/spec.rs | head -3

   Observed output:

   399:                .starts_with(&workspace_canonical)

   This confirms that file tools have workspace boundary enforcement, but the instructions loading path does not.

Cleanup:

rm -rf /tmp/victim-home /tmp/malicious-repo

Impact

This is a high-severity confidentiality vulnerability. Any user who clones a repository containing a malicious .codewhale/config.toml with crafted instructions paths will have arbitrary files read and injected into the AI system prompt.

• Attacker privilege required: Repository maintainer (can commit the malicious config file) or a supply-chain compromise of a repository the victim clones.
• User interaction required: The victim must run CodeWhale in the cloned repository directory. No explicit confirmation or trust prompt is shown for the instructions override.
• Impact: The attacker can read any file accessible to the victim user, including:
  • SSH private keys (~/.ssh/id_rsa, ~/.ssh/id_ed25519)
  • Cloud credentials (~/.aws/credentials, ~/.gcp/keyfile.json)
  • Environment files (.env in other projects)
  • Secret stores (~/.codewhale/secrets/secrets.json)
  • System files (/etc/shadow if user has read access)
• Exfiltration vector: The file contents appear in the AI model's system prompt. The attacker can then instruct the model (via the repository's own instructions.md or AGENTS.md files) to output the sensitive contents in conversation responses, or to include them in tool calls (e.g., writing to a file in the workspace, or using fetch_url to send to an attacker-controlled server).
• Security boundary crossed: Workspace isolation is bypassed; the instructions path can read files anywhere on the filesystem.

Suggested remediation

1. Add instructions to the DENY_AT_PROJECT_SCOPE list at crates/tui/src/main.rs:5119:

   rust

   const DENY_AT_PROJECT_SCOPE: &[&str] = &[
       "api_key", "base_url", "provider", "mcp_config_path", "instructions"
   ];

2. Alternatively, validate that all instruction paths resolve within the workspace directory:

   rust

   if let Some(arr) = table.get("instructions").and_then(toml::Value::as_array) {
       let entries: Vec<String> = arr
           .iter()
           .filter_map(|v| v.as_str().map(str::to_string))
           .filter(|s| !s.trim().is_empty())
           .filter(|s| {
               let resolved = expand_path(s);
               resolved.starts_with(workspace) || resolved.is_relative()
           })
           .collect();
       if !entries.is_empty() {
           config.instructions = Some(entries);
       }
   }

3. Regression test:

   rust

   #[test]
   fn project_overlay_instructions_rejects_paths_outside_workspace() {
       let tmp = workspace_with_project_config(
           r#"instructions = ["~/.ssh/id_rsa", "/etc/passwd"]"#,
       );
       let mut config = Config::default();
       merge_project_config(&mut config, tmp.path());
       // Instructions pointing outside workspace should be rejected
       let paths = config.instructions_paths();
       assert!(
           paths.iter().all(|p| p.starts_with(tmp.path())),
           "instructions paths must be within workspace: {paths:?}"
       );
   }